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GST Council Meeting #43

43rd GST Council Meeting — COVID Relief & Late Fee Amnesty

The 43rd Meeting (28 May 2021, Virtual) focused on compliance relief during India's second COVID wave — late fee amnesty for 1.46 Cr taxpayers, interest reduction to 9%, e-way bill relaxations, and preliminary discussions on COVID medical goods rate reductions.

28 May 2021
Date
Virtual (Delhi)
Location
Compliance Relief
Key Topic
1.46 Cr
Beneficiaries

Key Decisions — Compliance Relief & Amnesty

COVID-19 Rate Reductions
  • COVID-related medical goods — blanket recommendation for GoM to review entire list
  • Oxygen concentrators imported for personal use — 28% → 12% (retrospective from 1 May)
  • COVID testing kits (RT-PCR) — recommended continuation of 5% rate
  • Black Fungus (Mucormycosis) drugs — flagged for exemption (formalized in 44th)
  • Advance discussion on vaccine GST — 5% retained, states demanded exemption
Compliance Relief Measures
  • Late fee waiver: GSTR-3B for March & April 2021 — 15 days grace period
  • Interest rate reduced to 9% (from 18%) for delayed filing between Mar–May 2021
  • GSTR-1 filing deadline extended by 15 days for April–May 2021
  • Annual return GSTR-9 for FY2019-20 — due date extended to 31 Mar 2021 (further extension discussed)
  • Composition taxpayers — CMP-08 for Jan-Mar 2021 extended to 31 July 2021
  • ITC mismatch notices — paused during COVID wave (advisory issued)
Compensation Cess Extension
  • States unanimously demanded extension of Compensation Cess beyond June 2022
  • Back-to-back loan mechanism of ₹1.10 lakh Cr (FY21) discussed
  • Additional ₹1.59 lakh Cr borrowing for FY22 shortfall proposed
  • GoM on compensation recommended continuation — final decision deferred to 44th
  • Kerala, Punjab, and West Bengal filed written dissent on Centre's approach
E-Way Bill Relaxations
  • E-Way Bill validity extended for bills expiring between 30 Apr – 18 May 2021
  • Blocking of e-way bill generation (for non-filers) suspended till 18 May 2021
  • Auto-extension of e-way bills in containment zones where transporters stranded
  • State-level curfews recognized — transporters not penalized for expired EWBs
IT/Technology Decisions
  • GSTN portal: planned maintenance reduced during COVID wave
  • Auto-populated GSTR-3B from GSTR-1/2B — soft launch continued
  • QR code requirement on B2C invoices — enforcement deferred to 1 Oct 2021
  • E-invoice mandate for ₹50 Cr+ businesses — continued, no threshold change
Amnesty & Late Fee Rationalization
  • Late fee rationalization: Max ₹500/return (₹250 CGST + ₹250 SGST) for NIL returns
  • Max ₹2,000/return for non-NIL returns (₹1,000 CGST + ₹1,000 SGST)
  • Amnesty scheme: Reduced late fees for all pending returns from Jul 2017 – Apr 2021
  • Conditional waiver: File by 31 Aug 2021 to avail reduced late fee
  • Estimated 1.46 Cr taxpayers eligible for amnesty scheme benefit

Rate & Fee Changes

Item / FeeFromToCondition
Oxygen concentrators (personal import)28%12%Retrospective from 1 May 2021
COVID testing kits (RT-PCR/RAT)12%5% (continued)Already reduced in 2020
Ambulance services28%12% (recommended)Formalized in 44th Meeting
Late fee on NIL GSTR-3B₹20/dayMax ₹500Permanent rationalization
Late fee on non-NIL GSTR-3B₹50/dayMax ₹2,000Permanent rationalization
Interest on late filing (COVID period)18%9%Mar–May 2021 filings

Frequently Asked Questions

What was the 43rd GST Council Meeting about?
The 43rd Meeting (28 May 2021, Virtual) was primarily a preparatory session during India's devastating COVID-19 second wave. It focused on: (1) Compliance relief — extending deadlines, reducing late fees, waiving interest for March–May 2021; (2) Preliminary COVID rate discussions — recommending GoM review of medical goods rates (detailed decisions came in 44th meeting 2 weeks later); (3) Late fee rationalization — permanent cap of ₹500 for NIL returns and ₹2,000 for others; (4) Amnesty scheme for 1.46 Cr taxpayers with pending returns since July 2017; (5) Compensation Cess extension discussions.
What was the late fee amnesty scheme announced?
The 43rd Meeting announced India's first major GST late fee amnesty: (1) SCOPE: All pending GSTR-3B returns from July 2017 to April 2021; (2) REDUCED FEES: NIL returns — ₹500 max (was unlimited), Non-NIL — ₹1,000 max per return; (3) CONDITION: Must file by 31 August 2021; (4) BENEFICIARIES: ~1.46 Cr registered taxpayers with outstanding returns; (5) PERMANENT CHANGE: Going forward, late fees capped at ₹500 (NIL) and ₹2,000 (non-NIL); (6) RATIONALE: Many small businesses had stopped filing during COVID — this brought them back into compliance. The scheme was widely used and helped reduce the return pendency backlog significantly.
What COVID-19 relief was provided?
The 43rd Meeting provided compliance relief (not rate changes — those came in 44th): (1) Filing extensions: GSTR-3B and GSTR-1 deadlines extended 15 days; (2) Interest reduction: 9% instead of 18% for late filing during March–May 2021; (3) E-Way Bill: Extended validity for bills that expired during lockdowns, suspended blocking of EWB generation for non-filers; (4) Oxygen concentrators: Import duty reduced to 12% retrospectively from 1 May; (5) Rate GoM: Constituted a Group of Ministers to comprehensively review all COVID medical goods — their recommendations were acted on in the 44th Meeting (12 June 2021). This was a 'bridge' meeting between policy discussions.
Was Compensation Cess extended?
The 43rd Meeting DISCUSSED the extension but did NOT finalize it — that was deferred. Background: (1) States were guaranteed 14% annual growth for 5 years (2017-2022); (2) COVID caused massive shortfall (₹2.78 lakh Cr gap); (3) In FY21, Centre borrowed ₹1.10 lakh Cr and gave back-to-back loans to states; (4) For FY22, ₹1.59 lakh Cr was proposed; (5) Opposition states wanted direct compensation from Centre, not loans; (6) Final decision on extension came in the 45th (Sep 2021) and 46th (Dec 2021) meetings — Cess was extended till March 2026 to repay the loans taken during COVID.
When and where was the 43rd GST Council Meeting held?
Held on 28 May 2021 via video conferencing from New Delhi. Context: (1) India was at the peak of its catastrophic second COVID wave — daily deaths had exceeded 4,000 in early May; (2) Nationwide oxygen crisis, hospital bed shortages, and medication hoarding; (3) Multiple states were in full/partial lockdown; (4) Political pressure from opposition states for comprehensive COVID tax relief; (5) This was a 'preparatory' meeting — major rate changes were formalized 2 weeks later in the 44th Meeting (12 June). The meeting acknowledged the crisis but deferred detailed rate decisions to allow the newly constituted GoM to submit recommendations.

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